CDS

Accession Number TCMCG007C56222
gbkey CDS
Protein Id XP_033135702.1
Location join(30589731..30589799,30589880..30590011,30590155..30590312,30590448..30590492,30590881..30590959,30591055..30591128,30591220..30591599,30591755..30591958,30592034..30592211,30592291..30592368,30592448..30592761,30592851..30593043,30593126..30593384,30593471..30593801,30593894..30594074,30594151..30594291,30594391..30594640,30594715..30595122,30595189..30595649,30595734..30595870,30595954..30596135,30596215..30596604,30596709..30596834,30596961..30597026,30597104..30598866,30598934..30599243,30599376..30599594,30599662..30600564)
Gene LOC103840668
GeneID 103840668
Organism Brassica rapa

Protein

Length 2676aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_033279811.1
Definition small subunit processome component 20 homolog isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category V
Description Down-regulated in metastasis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14772        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGGCGACTCCAGCTGATTCTAGGGCTGTCAAGTCGCTCAACAACTCTCAGGGAACGAATAAATTTGTGTTCAAGAAGGTCGGTGAGAAAATGGAAGACACTAAAACAGAAGTAGTCAATGTCTTTAAGAGCTTGGAGAAGGTGAAGGCTGAGCCTTCACAGGGTTCCACCTTTCTCAAGGATCGCCTCGTAGAATTAAGGGAACTGAATACAACAGAACATTTTACTAAATTCTATGAAGAGATGTTCCCCTTTGTTCAAACTCTGCCGTTGGTCATCTCGCAAAAAGAAATAGTCTTCTCAAAGCTTGTCTCTGGATTACATATGGAAGCAAGATTATCTCTGGGAGCCTTTCTCGAGTTGATTGATGATTTATCGAGAGATCTCTTGGACAGCTTTATTCCCTTCCTTCCAAGGCTTGTTAACTCCTTAGTGACACTCCTGAAAAAGGGTGGTCAGAAAGAGCCAGATATTGTTAAGCAGATATTCGTATCATGGTCCAACATAGTAATGAACCTGCAGAAGTATCTCATATGCGACATCGAACGTGTTCTCAGGGATACACTGGAGCTGAGGTACTACCCCCAAGAATCTATCAACGAATTGATGTCACGTTCTATGGCACTTTTGTTGAGGACTGCACGGGATGAGCAACGCGAGATAGGTGATGAATTGCTTTTTTTTTTAATTTCTTTATGTTTTCTCCTTGTCTATATTAGGGACAGTCTATTTGATTCTTATCTCATGAACGTTACAGGGATCAAGAGGATCATTTCTGAACTTGCTGACCCACTGAAGAAATGTGGAGGAGCTGGACTACTATATCATGTTATGATCAGGGATGCTTCTGAGAAAAGTCTCCATTCCAAAGCTGGGAAAGCTTTGAGTTTCTTGCTGAAAGATTCAACATTGTCCTCTTGTGATGATTTTCCTCAGGGTTCTGGTAGTACAGTAGAAGCTGTGAGTTCAGCTTTGCAAAGAATATGCGAGGCAACTAATGCAGAAGAATTAACCGTTCTGTGGGACTGCTTGTTTAAAGAAACAAAAGAATCAATCAAAAACAAAAACTCAGCTCATTTGACCCGACTCTTGACACTGCTTACTTCAGCTGTTAGGGTTGGGAAAGGTCTCAAAGCTTGTGATTACCGATATTTGGTTGGACTTGTGAGCCAGATTGTGCCAACTTTTATGGATTCCTCTGATGTTCTCAGTAGATTTCTAGGACTGATGTTATGCACCATTGACATACCCAGTGATGTCAATGAGCTGGAATCCATTGCTTCACAATGGACCCCCATTTTTTCGTTGAAGAGTTTAAGTTTGGTGAGTTTCTTGCGGGGGTTGCTAGAGAAGAAAGATGGATTAATAGTGCAAGTCTTTGCCTGTAATATATTAAGCTGCATCAACAATATGATTACGGAGTCTTCGGAGGAGGTTATTCCTCTGTTACTATCATTGTGTAAGAAGCAGCAAACTAGTCACGACAAGGTGGATATCGTATATGGATCATTTGAGAGTATTCAGGTCTTCTTGGAAGACAAGATTAAGAAGATTCAAATAAATATAGAGAATACTGGATTAGCTCAAATTGATGAGGCTGAGTTGGCTGCTGTCTGGGGAGCTGTCAATTGTTTTCCCTATTTTAAATTGGATTCATCATTACTGATTCGCTTCAAGAATACTCTGAAACAGCAGTTGGCAGCCTCAGCTGTCAGCGGTTCTAGTGCTCAGGAACTAATGTGGCAGAGCTTACTTGGTTCTGCCTTGAGGTCATGTCTCAAAATCCGTTCTACTGGAAGACTCATCCACAGTGATGTAGAGGAAGTTTTGTCTCTTGCTAAATGTTACAAGTCATGTGTACAAGTGCTGTCTCCCGTAGCCGACTATTTGGATTTTGTGTATAGACCTCAATTAGCAAACGATGATATCTCTAAGCCATGTCCAGAGCTACAAGCAAACAATGCTGAAGATGCCTTTGACATATTTTGTGAAAATTTGCGTCACCCGAACAAAGACGTCCGTCTTATGACTCTAAGGATCTTGTGCCATTTTGAACCTTTGTCTCCTGACCCTTGTGTTGAAGAGCATCCTCCTCCAATGAAGAAGCTGAAAACTGAAGTGGTCCAGAAGTCTCCCTCTAAAAAGAATGATGTCACTACGAATGTTCTTCAGATACTGAAAACAGTTGGAGAGTCTCGTCCCACATTACGGAGTAAAAAGGATTTGGATGCAGTACGGCATCTCGCTGATGACAGGATACATGATGCATATGTGCCGCTTGTATTCAATGGAATGATAGGGTTGTTTCATACAAATAATGAATCTACTGAAATTTGGGAACCAGCATCTAAGTGCCTTGCGGATCTTATGATGAAGCACACAAGCGCGCTGTGGAATGGTTTTGTTCATTATTTGGGCCACTGCCAACTAAAAATTGAAGCACTCCACATTCATAGAGGGAATGGAAACTACAGCGTTTCACAGAAGCATACTGGTCTGATGGAGAGTTTTAATGCATTCATCTCCCCGCGGTTTAATGGTACGCCTACTGCAGATGTAGTATCTCTGTTGCTAAAGACCTTACAGAAAGTTCCCAGTGTTGCTCAGTCTCATACCTCTGATATTCTCCCTCTGCTATTGAAATTTATGGGGTACAAGACCGAAAACCCTTTGAGGGTCGGACTGTATAACAGCGAAGCTTGTAAAGGAAAGGAGTGGAAGGGGTTGCTGGAACAGTCTTTGGCTTTGCTGAAGCTGATGAAGAATCCGAGGTCGTCACGTGTTAGTCAATTTGTAAACGACGTTATGCAGTACAGGTTCTTGGATGATAATGATGCTGAAATACAAATGAGTGTCCTAGAGTGCCTTGTGCTGTCGAATGACTATTTACTCCCACACCGCCATCGTTTGGAGAATCTGATCAAGTCTAAAAAACTGAGAGAAGAGCTCACGAACTGGAACTTCTCCAAGGACATTGAGGAAGCTCACAGATCTCACTTTGTTTCTCTTGTAATTAGAATCATTATGCCAAAAGTTAGGAGTTTAAAAAATTCAGCGTCGCGTGAGCGTACAAGTATTCGTCACAGGGAGGCAGTTCTTGGCTTTATATCTCAGCTGGATGTTAATGAACTTTCCCTCTTCTTTGCATTGTTGATGAAGCCTTTGAACATTATATCAGATGAAGCAACGGACCTGTTTTGGAGCTCCGGTAAAAGCTCTCTGGATTATTTCCAAAGGTCCAAGTTCTCGAAATATATCAACGTGGATGCTCTTTCTACCTTGTCCTGGAAGATGAAATCTGGTTTTCTTCATGTCATCCAACACATACTTGAAGTCTTTGATGTATTCCATGTCCGACCATTTCTAGACTTTCTCATGGGATGTGTTGTCCGGCTATTAGTAAACAACGCTCCAAATATCGATGAAGAAAGTAACAACATTGATAAAGAGATTGTCTCAACAAATCACGACCAGGCTGGCACTTCTCTAAAGCAGTTTAAAGAGTTGAGATCCTTATGTCTGAAGATTATTGCTCGTGTTCTTAAAAAGTACGAGGATTGTGATCTTGGCTCTGAGTTCTGGGACCTATTCTTTTCAGCGGTGAATCCGTTGATCAAGAGTTTTAAGCAGGAGGGTTCCAGCAGTGAGAAACCAAGCTCATTGTTCACATGCTTCTTGTCAATGAGCAAAAGCCCCAATCTCGTCACCTTCTTATGTCGGGAAGAGTCTCTTGTTCCAGACATTTTCTCAATTCCAACAGTCACCACAGCTTCAGAAGCTATAAAGTCCTCTGCCTTGAGTTTCATAAAGAATCTGCTCAGCCTTGAGAAGGACATGGAGGACGATGACCATATGAACAAAGGATTCTTAAACCCATACATAGACGCACTGATTAACAACTTACATTCTCTCTTTCGTGGAGATATTTTGAGAAGGAAATCATTCAAGTATCATGGTGAAAGAGAGATCAAGATTCTTAAACTATTGTCGAAACATATCAGAGATGAATCTCATGTAATGAAGTATTTGAACATCTTGCTGTCTTTCTTGGACAAACGTGTGAAATATTCTGATATTCATCGTGAGGCTTTGCTAGCCATTCAAGACATCACATCGTTGCTTGGGAGTGAGAGTACTAACAAAATTATAGATACAGTCTCTCTTCTGCTTGTTGACGCTAAACCTGATGTCCGATTATGCATTTGTAACCTTCTTGAGTCCCTTGCGAAAATCGATTCTTCTCTAGATCGAGTGGCAAAATGCGTAAGCGATATGAATGCAACCTCACCCATGAAAGTTGATGACCTTGACTATGAAACGATAATGGATGCTTATGCCAAGATTGATGTGGATTTCCTTAACGAATCCTCGGAGCAGCACATGATGATCATTCTCTCACAGAGTCTATACAACATGACATCAAAAGAAGTTATGCTAAAGGATTGTGCATGTAACCTCTTGTGCACTTTTATTGAATTTTCAGCCTCTTTACTTTGCCAAGAGGCCTCAGCACACTCCGACATTGGCAAAGAGGTTTCAAAATCCGTTGCAAGATGGACAGGCGATCGCGTGTTGTGGATTATGAATAAGTTTATTTTGAAACACATTGGCGATGCAGTAAACAACGGAATCTCATGTGGAAAGGGGGAGATTCTTTTGATACGCAAAATGGTGATGAGACTTCCAGATTCCGGGAATCTTTCTGCATTCAGACCTTTGTGCTCTGAGAACGATGACCTTGATTTCTTCAAAAACGTCTTTAACATTCAGGCACACCGTAGAGCAAAGGCAATTAACAGTTTTGCCAAGGAGATCAAAGATAGCAGTCTGCCTGAGGGAGTAGTGAGAAAACTCTTGGTCTCAATCTTTTTCAACATGTTGCTTGAGGGACAAGAAAGAAAAGGTCAAGATAGTAAAGGTCGAGTTAAAAAGGGTCAAAATAGTAAAGATGAAAATGTCCTTGATGCATGCGAAGAAGCGCTTGCATCCCTGTCTGCTCATATGAGTTGGACCTCGTACTACGCTCTATTGAAGGGGTGTTTCCGAGAGATGAAGCAGCATACCGACAAGAGCAAGCGTCTGTTGGATCTCGTCTGCTTGATCTTGGACAAGTTTCACTTTGCAGAAGGTGGTGAGGCTCACGAGGAGATTAGGGGTTGCCTTGACAAAACCTTGTATCCAAAGATAACGAAGCTGTTTGATTCTGAGTCTGATGGCGTTAACTTCAACGCCTATGTAGCTGCTGTGAAGGTTCTAAAGCTACTTCCCAAAGAGATAATGGACTCAAAGATAGATTCTTTAGTCAATAAACTTTCCAATTTTTTGAGGGACGCGATGGAGAGCACACGTGAGGGAGCCAGAAAAGCTCTGGCTTCTTGTTTGAAGGAGCTTGGCCTGGAGAATTACTTGCAACTTGTCGTTAAGAAGCTAGTTTCTGTATTAACAAAAGGATCTGAGGTGCATGTGCTGGGGTACACTGTCAATCACATCTTATCGAAGTGCCTGCCAAGTCCTACTGGGTGGAAGTTGGATCATTGTTTGGAAGATCTTCTTGATGTGGTGGAAGCCGATATCCTTGGAGATGTTGATGAACAGAAAGAGGACAAGAAAGATTTAATGAATAAGAGGAAGAAGAAGAAAGAAACGATAAAACGCAAGTCACTTGATTCTCTGAGATTGATTGCTGAAAATGTAACGTTCAGAAGCCATGCATTGACGCTACTTTCTCCTGTCACTAAACAGCTGCAAGGGCCTATGACTTCGAAGCTAAAATCAACGCTTCAGGATATGTTAAAGCATATTGCAATTGGTCTTGAAGGGAATCCATCTGTTGATCAAGGACATCTTTTCTGTTTTATATATCACCTTGTTAACGACAACAAGAAGAGTGGTCTTAGAGGTCAAATATCTTCCCGGCCATCCAAAAAGAAAAGGAAATCGAGACGTATTCAAGACACTTCTGGTGCAAAGTCATGTCCACATCTCATCACGGTGTTTGCTTTGAACTTATTGCACAACAGACTGAAGAGAATCCAACCCAACAATACTAACGAAGAGCTGGTGTCGAAGCTGGATCCGTTTGTCAAACTACTTGTTGGTTGTTTGAGCTCTGTGTACGAAGATGTTGTGTCTTCATCTGTTAAATGTTTCACTGCATTGTTAAGGCTTCAACTGCCTTCCTTCAGGTCTGAAGCACGTGAAGTGAAAACCAAAGTGTTAGCCATTGCTCAGTCTGCAGTGAGTTCCAGTAGTCCTCTTGTGCAGTCATGCCTCAAGCTGTTAACAGCTCTTGTCAGCAATGATAACTTCAAGTTATCATCTGAGGAGTTGAAAATGTTGATTCAGTTCCGTATGTTTTCTGATCTGGAATCGGATTCCTCTGTTGCTTCTCTTTCACTTCTCAAGGCCATTGTGAGAAAGAAGCTCAAAGTTCCGAAGATATATGATATTGCCGACCAGGTTTCAAGGTTGATGATAACACATCAGGATAAATCAATCCGCAATAAATGTGGAGATATACTGGTAGAGTTTTTGGTCAATTATGTATCTTCCGAGAAACGCCTAGAAGGACATTTTAACTTTTTTCAGAAAAATCTGAGCTATGAACATTCAACTGGAAGAGAAGCAGTTCTTGACGTTCTTCAAAAGCTTATCCATAAATTCCCAGATCCTAGTCCTGGCAAGCAGTCGAAACCTTGTCTAGGCCACCAGTCAGTTGTTGACCAGCAGTCTCAAAACTTGTTTATTGAGCTTGCTCTTCATTTGGAAAGAGAAAATGATCAAAAGTTGCTGGCTAAGATTTGTGATGTGATGAAGCTTCTCATAGGCTGCATGAATAATTATAAGTCCAGTCTTAAGCTCTCTCTGGGTTGGTATAAGCAGGAGAACTCACGGGTTAGAGGAGCAAAGGTATTGAGGTTATTCATTGAAGCCGAGAAAAAGTTTCCAGAGAAAAAATGCAGTATACTGTTGAAAGAGGGTAAAACGATTTTAGAGTCTGCTGTAAAGTTGCAAAACACTGTTGAGGAAGGTAGTATTCCCTTATGGAAGGAAGCATATTACTCTCTGATTATGATAGAGAAGATGCTCACGCGGTTTCCTCATTTATGTTTTCGTGAAGATTCTAAGGATGTTTGGACAATGGTGTTTAAGTTGTTGTTGCACCGACATGAGTGGTTGCAAACTACAACATGCCGACTCTTGCACTATTATTTCAAAAACCTACCCGAGTCTACGGAAGCTGAGTCTCTTCTTGGTAAGCCAAGTAGCCTTTTCATGGTAGCTGCTTCTCTTTGCTTCCAGTTAAAGCTAAAGGTGGACCGCAACAGAGTCGTCAACAAAAACAATGATACCACTGAAGAAGATTATCTCAGAGAGAATCTTGTTTTTGCTGTCACTGGACTTCATTCAATGATTGGACAAACAGATGATGAGTACTGGTCAAGTCTCGACAGTGATGAGCAAGCAAAGTTCATGGAAGCCTTTCTAGTATTTGATTCAGGGAAAGTAAGGTCTACTTTTCTGGCTCTTACTAGTTCAGGCCACCTGAAAGGCCAAGATGATGTAAGAAACGTATTGGTCGGAAGCTTACTCAAAAGAATGGGGAAGCTTGCGTTTGATGTGGACTCTCATCAGATGAGAATAGTGTTCAACGTTTGTAAAGAGTTTGCCTCAAACTTGAATCAGGAAGAGTGTCGCCTATACGCCTTCAGGATTCTGCTTCCTTTATACAAAGTTTGCCAAGGGTTTACAGGGAAAGTCATCACAGACGAGTTGGAACAGCTAGCTGAAGAGGTGAGAGACGGTATAAGAGACAAGAGCTTAGGCGTTCAGATGTTTGTGAAAGTTTACAGCGAAATCAAAAAGAGTTTGGAAGTGAAAAGGCAGAAGAGGAGGCGAGAAGAGAAGGAAATGGCGGTGGTGAACCCTGAGAGGAACGCAAAGAGGAAACTGAAGGTAGCTTCGAAGAACAAGGCTAACAAGAAGAGGAGGATGATGAGGAGTAAAATGGATAGATGGTCACGCTCTTGA
Protein:  
MATPADSRAVKSLNNSQGTNKFVFKKVGEKMEDTKTEVVNVFKSLEKVKAEPSQGSTFLKDRLVELRELNTTEHFTKFYEEMFPFVQTLPLVISQKEIVFSKLVSGLHMEARLSLGAFLELIDDLSRDLLDSFIPFLPRLVNSLVTLLKKGGQKEPDIVKQIFVSWSNIVMNLQKYLICDIERVLRDTLELRYYPQESINELMSRSMALLLRTARDEQREIGDELLFFLISLCFLLVYIRDSLFDSYLMNVTGIKRIISELADPLKKCGGAGLLYHVMIRDASEKSLHSKAGKALSFLLKDSTLSSCDDFPQGSGSTVEAVSSALQRICEATNAEELTVLWDCLFKETKESIKNKNSAHLTRLLTLLTSAVRVGKGLKACDYRYLVGLVSQIVPTFMDSSDVLSRFLGLMLCTIDIPSDVNELESIASQWTPIFSLKSLSLVSFLRGLLEKKDGLIVQVFACNILSCINNMITESSEEVIPLLLSLCKKQQTSHDKVDIVYGSFESIQVFLEDKIKKIQINIENTGLAQIDEAELAAVWGAVNCFPYFKLDSSLLIRFKNTLKQQLAASAVSGSSAQELMWQSLLGSALRSCLKIRSTGRLIHSDVEEVLSLAKCYKSCVQVLSPVADYLDFVYRPQLANDDISKPCPELQANNAEDAFDIFCENLRHPNKDVRLMTLRILCHFEPLSPDPCVEEHPPPMKKLKTEVVQKSPSKKNDVTTNVLQILKTVGESRPTLRSKKDLDAVRHLADDRIHDAYVPLVFNGMIGLFHTNNESTEIWEPASKCLADLMMKHTSALWNGFVHYLGHCQLKIEALHIHRGNGNYSVSQKHTGLMESFNAFISPRFNGTPTADVVSLLLKTLQKVPSVAQSHTSDILPLLLKFMGYKTENPLRVGLYNSEACKGKEWKGLLEQSLALLKLMKNPRSSRVSQFVNDVMQYRFLDDNDAEIQMSVLECLVLSNDYLLPHRHRLENLIKSKKLREELTNWNFSKDIEEAHRSHFVSLVIRIIMPKVRSLKNSASRERTSIRHREAVLGFISQLDVNELSLFFALLMKPLNIISDEATDLFWSSGKSSLDYFQRSKFSKYINVDALSTLSWKMKSGFLHVIQHILEVFDVFHVRPFLDFLMGCVVRLLVNNAPNIDEESNNIDKEIVSTNHDQAGTSLKQFKELRSLCLKIIARVLKKYEDCDLGSEFWDLFFSAVNPLIKSFKQEGSSSEKPSSLFTCFLSMSKSPNLVTFLCREESLVPDIFSIPTVTTASEAIKSSALSFIKNLLSLEKDMEDDDHMNKGFLNPYIDALINNLHSLFRGDILRRKSFKYHGEREIKILKLLSKHIRDESHVMKYLNILLSFLDKRVKYSDIHREALLAIQDITSLLGSESTNKIIDTVSLLLVDAKPDVRLCICNLLESLAKIDSSLDRVAKCVSDMNATSPMKVDDLDYETIMDAYAKIDVDFLNESSEQHMMIILSQSLYNMTSKEVMLKDCACNLLCTFIEFSASLLCQEASAHSDIGKEVSKSVARWTGDRVLWIMNKFILKHIGDAVNNGISCGKGEILLIRKMVMRLPDSGNLSAFRPLCSENDDLDFFKNVFNIQAHRRAKAINSFAKEIKDSSLPEGVVRKLLVSIFFNMLLEGQERKGQDSKGRVKKGQNSKDENVLDACEEALASLSAHMSWTSYYALLKGCFREMKQHTDKSKRLLDLVCLILDKFHFAEGGEAHEEIRGCLDKTLYPKITKLFDSESDGVNFNAYVAAVKVLKLLPKEIMDSKIDSLVNKLSNFLRDAMESTREGARKALASCLKELGLENYLQLVVKKLVSVLTKGSEVHVLGYTVNHILSKCLPSPTGWKLDHCLEDLLDVVEADILGDVDEQKEDKKDLMNKRKKKKETIKRKSLDSLRLIAENVTFRSHALTLLSPVTKQLQGPMTSKLKSTLQDMLKHIAIGLEGNPSVDQGHLFCFIYHLVNDNKKSGLRGQISSRPSKKKRKSRRIQDTSGAKSCPHLITVFALNLLHNRLKRIQPNNTNEELVSKLDPFVKLLVGCLSSVYEDVVSSSVKCFTALLRLQLPSFRSEAREVKTKVLAIAQSAVSSSSPLVQSCLKLLTALVSNDNFKLSSEELKMLIQFRMFSDLESDSSVASLSLLKAIVRKKLKVPKIYDIADQVSRLMITHQDKSIRNKCGDILVEFLVNYVSSEKRLEGHFNFFQKNLSYEHSTGREAVLDVLQKLIHKFPDPSPGKQSKPCLGHQSVVDQQSQNLFIELALHLERENDQKLLAKICDVMKLLIGCMNNYKSSLKLSLGWYKQENSRVRGAKVLRLFIEAEKKFPEKKCSILLKEGKTILESAVKLQNTVEEGSIPLWKEAYYSLIMIEKMLTRFPHLCFREDSKDVWTMVFKLLLHRHEWLQTTTCRLLHYYFKNLPESTEAESLLGKPSSLFMVAASLCFQLKLKVDRNRVVNKNNDTTEEDYLRENLVFAVTGLHSMIGQTDDEYWSSLDSDEQAKFMEAFLVFDSGKVRSTFLALTSSGHLKGQDDVRNVLVGSLLKRMGKLAFDVDSHQMRIVFNVCKEFASNLNQEECRLYAFRILLPLYKVCQGFTGKVITDELEQLAEEVRDGIRDKSLGVQMFVKVYSEIKKSLEVKRQKRRREEKEMAVVNPERNAKRKLKVASKNKANKKRRMMRSKMDRWSRS